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These cheesy baked ham and egg cups are a quick, low carb, WW friendly breakfast that’s perfect for busy mornings or make-ahead meal prep. I love how simple they are to put together—just line a muffin tin with slices of ham, crack in an egg, add a sprinkle of cheese, and bake. In about 20 minutes you’ve got a protein-packed breakfast that reheats beautifully during the week and is elegant enough to serve for brunch.

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Easy Ham and Cheese Egg Muffin Cups in 6-cup muffin tin.

Why I Love This Recipe for Cheesy Baked Ham and Egg Cups

  • Quick and Easy: Just a few ingredients and about 20 minutes in the oven for a hot, satisfying breakfast.
  • Low Carb and WW Friendly: High in protein and naturally low in carbs, making it a smart choice for Weight Watchers or anyone watching carbs.
  • Meal Prep Ready: Bake a batch ahead of time and reheat for busy mornings, lunches, or snacks.
  • Works Anytime: While perfect for breakfast, these ham and egg cups also make a simple lunch or light supper alongside a salad.
  • Versatile: Change up the cheese, seasonings, or even swap the ham for turkey or chicken slices.
  • Elegant Yet Simple: Pretty enough to serve guests at brunch, but easy enough to make on a weekday.

Ingredients and Easy Swaps

  • Ham slices – thin deli ham is ideal for shaping into cups, but you can also use turkey or chicken slices if you prefer something leaner.
  • Eggs – large eggs work best here, though you could swap in egg whites or use a carton of liquid eggs if that’s what you have on hand.
  • Cheese – cheddar is classic, but Swiss, Parmesan, feta, or even goat cheese give these cups a different flavor. You can also skip the cheese for a lighter version.
  • Seasonings – simple salt and pepper work fine, but blends like Italian seasoning, Mrs. Dash, or fresh herbs (parsley, dill, cilantro) make it easy to change things up.
  • Optional veggies – chopped spinach, roasted red peppers, sautéed mushrooms, or even a little leftover broccoli can be tucked under the egg for extra nutrition.

How Many Calories and WW Points?

According to my calculations, each serving has 121 calories.

To see your WW Points for this recipe, track it in the WW App!
(You must be logged into WW on a smartphone or tablet.)

3 PointsPlus (Old plan)

How to Make Baked Ham & Egg Cups

Step 1: Preheat the oven. Set your oven to 375°F and lightly spray a muffin tin with nonstick cooking spray.

Step 2: Make the Ham and Egg Cups. Gently press a slice of ham into each muffin cup, shaping it to form a little “nest.” Carefully crack an egg into each ham-lined cup.

6-cup muffin tray filled with ham and egg.

Step 3: Season and top. Sprinkle with salt, pepper, and any herbs you like. Add a little shredded cheese on top, or tuck in chopped veggies before adding the egg.

6-cup muffin tin filled with ham, egg and cheese.

Step 4: Bake. Place the muffin tin in the oven and bake until the eggs are set to your liking, about 18–22 minutes.

Step 5: Cool slightly. Let the cups rest in the pan for a couple of minutes before removing—the eggs will continue to firm up as they sit.

6-cup muffin tin filled with ham, egg and cheese muffins.

Recipe Notes and Tips

  • Easy release: Spraying the muffin tin well or using silicone liners makes cleanup easier and helps the cups come out intact.
  • Customize the protein: Ham is classic, but turkey or chicken slices also work well for the “cups.”
  • Cheese flexibility: Try cheddar, Swiss, Parmesan, feta, or goat cheese—or skip it if you prefer a lighter version.
  • Veggie add-ins: Spinach, mushrooms, or roasted red peppers add color, flavor, and extra nutrition. Just make sure any vegetables are drained well so the cups don’t get watery.
  • Runny or firm yolks: For softer yolks, pull the cups from the oven a minute early—they’ll continue to cook as they rest in the pan. For firmer yolks, let them bake an extra couple of minutes.

Serving Suggestions

These baked ham and egg cups make a high-protein, low carb breakfast on their own, but you can round out the meal depending on the occasion:

  • Light lunch or supper: Add a couple of cups to a fresh green salad for a quick, healthy meal any time of day.
  • Simple breakfast: Pair with whole wheat toast or English muffins and a bowl of fresh fruit.
  • On-the-go: Take one or two cups with an apple, banana, or grapes for a portable breakfast or snack.
  • Brunch spread: Serve alongside roasted potatoes, fruit salad, and muffins for an easy, make-ahead addition to your brunch table.

Storing and Using Leftovers

  • Refrigerator: Store cooled egg cups in an airtight container in the fridge for up to 4 days.
  • Freezer: Wrap individually and freeze for up to 2 months. Thaw overnight in the fridge before reheating.
  • Reheating: Warm in the microwave (affiliate link) for 30–60 seconds or in a 350°F oven until heated through.
  • More ways to use them: Tuck a reheated cup into a whole grain English muffin for a quick breakfast sandwich, or slice one up to top a salad for lunch.

If you’ve made these Low Carb Baked Ham and Egg Cups, please give the recipe a star rating below and leave a comment letting me know how you liked it. And stay in touch on Pinterest, Facebook, Instagram and Twitter for the latest updates.

muffin tin with whole eggs baked in sliced deli ham lined cups topped with cheese and baked
4.79 from 14 votes

Baked Ham and Cheese Egg Cups

A quick and easy breakfast idea fancy enough for guests.
Prep: 10 minutes
Cook: 15 minutes
Total: 25 minutes
Servings: 6
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Ingredients 

  • 6 large eggs
  • 6 slices very lean ham
  • 6 tablespoons reduced fat shredded cheddar cheese

Instructions 

  • Heat the oven to 350F degrees. Spray a 6-cup muffin pan with nonstick spray.
  • Divide the ham slices into the cups, filling the bottom and sides.
  • Crack each egg into a ham lined cup
  • Sprinkle each egg with 1 tablespoon shredded cheese.
  • Sprinkle any optional seasonings over the top.
  • Bake for 15 to 20 minutes or until done to your desired firmness.
  • Remove from the oven and let cool 1 minute before removing the eggs from the muffin tin.

Notes

Serving size: 1 egg muffin cup
WW Points: 2
Check the WW Points for this recipe and track it in the WW app.
(Must be logged into WW on a smartphone or tablet.)
3 SmartPoints (Green plan)
1 SmartPoints (Blue plan)
1 SmartPoints (Purple plan)
3 PointsPlus (Old plan)
This quick and easy recipe can be modified in any number of ways to suit your preferences.
  • Different Meat: Substitute lean chicken or turkey slices for the ham.
  • Add Veg: Add your favorite vegetables before the cracked egg. Defrosted drained frozen spinach and/or chopped roasted red peppers from a jar would be good.
  • Cheese Options: Use whatever cheese you prefer. Grated swiss or Parmesan would be nice as would goat or feta. Or skip it altogether.
  • Herbs and Seasonings: Top with whatever seasonings you prefer: salt & pepper, Mrs. Dash salt free seasoning, chopped fresh parsley, cilantro, dill,  etc.
If you like your eggs super runny, you might want to pull them from the oven a minute before you think they’re ready. You’ll need to let them rest for a few minutes in the muffin tin before taking them out and during these few minutes, the eggs will continue to cook slightly.

Nutrition

Serving: 1egg muffin cup, Calories: 121kcal, Carbohydrates: 1.3g, Protein: 12.3g, Fat: 7.2g, Saturated Fat: 3g, Polyunsaturated Fat: 1g, Monounsaturated Fat: 2g, Trans Fat: 0.02g, Cholesterol: 205mg, Sodium: 446mg, Potassium: 154mg, Fiber: 0g, Sugar: 0.2g, Vitamin A: 284IU, Calcium: 59mg, Iron: 1mg

Nutrition information is automatically calculated, so should only be used as an approximation.

Additional Info

Course: Breakfast
Cuisine: American
Tried this recipe?Mention @simplenourishedliving or tag #simplenourishedliving!

More WW Friendly Egg Recipes to Try

If you enjoyed these cheesy baked ham and egg cups, here are a few more simple, WW friendly egg recipes you might like:

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About Hallie Harron

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4.79 from 14 votes (11 ratings without comment)

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6 Comments

  1. 5 stars
    For a well-done egg white, I usually cook for 20 minutes. The yolk is still runny. I add chopped fresh spinach before adding the egg. Delicious!

  2. I have made these several times, sometimes changing out or adding to the ingredients – you can either add extra cheese, or not; same with peppers or mushrooms, etc. I like to make a variety of them to keep in the freezer – ready to have a quick breakfast or snack while on the run.